PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000168871
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 482aa    MW: 52609 Da    PI: 6.1694
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000168871genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.59e-31249307259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dpk+++itY++eHnh+
  MDP0000168871 249 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPKMLVITYTSEHNHP 307
                    699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.43243309IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.2E-31245309IPR003657WRKY domain
SuperFamilySSF1182906.15E-26246309IPR003657WRKY domain
SMARTSM007741.9E-37248308IPR003657WRKY domain
PfamPF031061.1E-25250307IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MENFQGDLTD ILRAGTTTAT VGADPSDHQE PYTDSWHFPS DHRMIFPSSS SAMEEAEETK  60
DNFGDPFLSY MRDPLLNELG ISSSSLFSSP NCTARAEEDV TTTTFGSGGD GSHHVLSLGH  120
HNHQSGGVVV DGDPIKRPYN IFSRMLQISP SAKVPVSPCD SPVIGAAVSS SPREIKTSSA  180
STAMVASDMI INANSSSAAK GCLLENTGMQ ISSPRNPGIK RRKSQAKKVV CIPAPAAANS  240
RPTGEVVPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC SARKQVERSR TDPKMLVITY  300
TSEHNHPWPT QRNALAGSTR SQPSKNGGAA ALKISPNSSH QPHQKPTGPT KEEQNENVND  360
NDDNHMSPTV ITAGSASTVK EEFEDVEKQL ELDHHHHQQL GFAYRPSMPD EQSNQSHHLD  420
DFFADLGEIE ADPLNLLFLQ CFSADEQQQK AAEPLDPFNL LDNWSGDHNT NNTSFAEAKR  480
RL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A2e-172503091977Probable WRKY transcription factor 4
1wj2_A2e-172503091977Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.263330.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008367402.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLM5WIC80.0M5WIC8_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s46490.11e-151(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.16e-83WRKY DNA-binding protein 14